CRISPRone

CRISPRone report for GCA_001451295.1_WH-SGI-V-07408

♦ Seq 1: LLOV01000030.1 Pseudomonas aeruginosa strain WH-SGI-V-07408 WH-SGI-V-07408_contig25, whole genome shotgun sequence

⇒Summary: seq-len = 80800 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36828-47272 bp Zoom in on locus 1 x12 x19 CRISPR array Location: 36828-37516 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 36828-37516 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 37765-38328 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38332-39360 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39371-40354 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40341-41645 bp Gene: COG1203:cas3 Type: Type-I Location: 41703-44933 bp Gene: cd09718:cas1 Type: universal Location: 44930-45904 bp CRISPR array Location: 46165-47272 bp Num of repeats: 19 Spacers: s12-s29 CRISPR array Location: 46165-47272 bp Num of repeats: 19 Spacers: s12-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36828-37516 bp]: array | spacers
           [Locus range 46165-47272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)