CRISPRone

CRISPRone report for GCA_001451325.1_WH-SGI-V-07410

♦ Seq 1: LLOX01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07410 WH-SGI-V-07410_contig20, whole genome shotgun sequence

⇒Summary: seq-len = 48740 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1399-11777 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 1399-2507 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1399-2507 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2767-3741 bp Gene: COG1203:cas3 Type: Type-I Location: 3738-6968 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7026-8330 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8317-9300 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9311-10339 bp Gene: cd09739:cas6f Type: other Location: 10343-10906 bp CRISPR array Location: 11090-11777 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 11090-11777 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1399-2507 bp]: array | spacers
           [Locus range 11090-11777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)