CRISPRone

CRISPRone report for GCA_001451335.1_WH-SGI-V-07409

♦ Seq 1: LLOW01000060.1 Pseudomonas aeruginosa strain WH-SGI-V-07409 WH-SGI-V-07409_contig22, whole genome shotgun sequence

⇒Summary: seq-len = 100886 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1434-14335 bp Zoom in on locus 1 x45 x28 CRISPR array Location: 1434-4104 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 1434-4104 bp Num of repeats: 45 Spacers: s1-s44 Gene: cd09718:cas1 Type: universal Location: 4365-5339 bp Gene: COG1203:cas3 Type: Type-I Location: 5336-8566 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 8624-9928 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 9915-10898 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 10909-11937 bp Gene: cd09739:cas6f Type: other Location: 11941-12504 bp CRISPR array Location: 12688-14335 bp Num of repeats: 28 Spacers: s45-s71 CRISPR array Location: 12688-14335 bp Num of repeats: 28 Spacers: s45-s71 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1434-4104 bp]: array | spacers
           [Locus range 12688-14335 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)