CRISPRone

CRISPRone report for GCA_001451355.1_WH-SGI-V-07412

♦ Seq 1: LLOZ01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07412 WH-SGI-V-07412_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 894116 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 279910-292310 bp Zoom in on locus 1 x28 x25 CRISPR array Location: 279910-281585 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 279910-281585 bp Num of repeats: 28 Spacers: s1-s27 Gene: pfam09707:cas2 Type: universal Location: 281650-281949 bp Gene: cd09719:cas1 Type: universal Location: 281946-282836 bp Gene: pfam08798:cas6e Type: other Location: 282863-283402 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 283449-284111 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 284113-285255 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 285265-285795 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 285792-287360 bp Gene: cd09641:cas3HD Type: Type-I Location: 287363-290044 bp CRISPR array Location: 290817-292310 bp Num of repeats: 25 Spacers: s28-s51 CRISPR array Location: 290817-292310 bp Num of repeats: 25 Spacers: s28-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 279910-281585 bp]: array | spacers
           [Locus range 290817-292310 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)