CRISPRone

CRISPRone report for GCA_001451375.1_WH-SGI-V-07417

♦ Seq 1: LLPE01000058.1 Pseudomonas aeruginosa strain WH-SGI-V-07417 WH-SGI-V-07417_contig19, whole genome shotgun sequence

⇒Summary: seq-len = 87342 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55180-67960 bp Zoom in on locus 1 x23 x48 CRISPR array Location: 55180-56528 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 55180-56528 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 56711-57274 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 57278-58306 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 58317-59300 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 59287-60591 bp Gene: COG1203:cas3 Type: Type-I Location: 60649-63879 bp Gene: cd09718:cas1 Type: universal Location: 63876-64850 bp CRISPR array Location: 65112-67960 bp Num of repeats: 48 Spacers: s23-s69 CRISPR array Location: 65112-67960 bp Num of repeats: 48 Spacers: s23-s69 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55180-56528 bp]: array | spacers
           [Locus range 65112-67960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)