CRISPRone

CRISPRone report for GCA_001451405.1_WH-SGI-V-07419

♦ Seq 1: LLPG01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07419 WH-SGI-V-07419_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 843091 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 625366-635878 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 625366-625884 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 625366-625884 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 626657-629338 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 629341-630909 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 630906-631436 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 631446-632588 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 632590-633252 bp Gene: pfam08798:cas6e Type: other Location: 633227-633838 bp Gene: cd09719:cas1 Type: universal Location: 633865-634755 bp Gene: pfam09707:cas2 Type: universal Location: 634752-635051 bp CRISPR array Location: 635116-635878 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 635116-635878 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 625366-625884 bp]: array | spacers
           [Locus range 635116-635878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)