CRISPRone

CRISPRone report for GCA_001451575.1_WH-SGI-V-07485

♦ Seq 1: LLPR01000052.1 Pseudomonas aeruginosa strain WH-SGI-V-07485 WH-SGI-V-07485_contig6, whole genome shotgun sequence

⇒Summary: seq-len = 446376 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 500-1849 bp Zoom in on locus 1 x23 CRISPR array Location: 500-1849 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 500-1849 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 500-1849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLPR01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07485 WH-SGI-V-07485_contig18, whole genome shotgun sequence

⇒Summary: seq-len = 48548 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499-10517 bp Zoom in on locus 1 x11 x14 CRISPR array Location: 499-1127 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 499-1127 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1387-2361 bp Gene: COG1203:cas3 Type: Type-I Location: 2358-5588 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5646-6950 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6937-7920 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7931-8959 bp Gene: cd09739:cas6f Type: other Location: 8963-9526 bp CRISPR array Location: 9710-10517 bp Num of repeats: 14 Spacers: s11-s23 CRISPR array Location: 9710-10517 bp Num of repeats: 14 Spacers: s11-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 499-1127 bp]: array | spacers
           [Locus range 9710-10517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)