CRISPRone

CRISPRone report for GCA_001451705.1_WH-SGI-V-07491

♦ Seq 1: LLPX01000052.1 Pseudomonas aeruginosa strain WH-SGI-V-07491 WH-SGI-V-07491_contig8, whole genome shotgun sequence

⇒Summary: seq-len = 287673 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44733-46946 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 44733-45704 bp Gene: unk Type: unknown Location: 45813-46499 bp Gene: cd09693:cas5 Type: Type-I Location: 46539-46946 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLPX01000006.1 Pseudomonas aeruginosa strain WH-SGI-V-07491 WH-SGI-V-07491_contig14, whole genome shotgun sequence

⇒Summary: seq-len = 174301 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127350-136952 bp Zoom in on locus 1 x6 x12 CRISPR array Location: 127350-127679 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 127350-127679 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 127943-128917 bp Gene: COG1203:cas3 Type: Type-I Location: 128914-132144 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 132202-133506 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 133493-134476 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 134487-135515 bp Gene: cd09739:cas6f Type: other Location: 135519-136082 bp CRISPR array Location: 136265-136952 bp Num of repeats: 12 Spacers: s6-s16 CRISPR array Location: 136265-136952 bp Num of repeats: 12 Spacers: s6-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 127350-127679 bp]: array | spacers
           [Locus range 136265-136952 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)