CRISPRone

CRISPRone report for GCA_001451805.1_WH-SGI-V-07497

♦ Seq 1: LLQD01000067.1 Pseudomonas aeruginosa strain WH-SGI-V-07497 WH-SGI-V-07497_contig24, whole genome shotgun sequence

⇒Summary: seq-len = 107022 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13803-26545 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 13803-14348 bp Gene: unk Type: unknown Location: 14427-15338 bp Gene: unk Type: unknown Location: 21811-22275 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 22400-24385 bp Gene: unk Type: unknown Location: 24428-25477 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 25628-26545 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLQD01000058.1 Pseudomonas aeruginosa strain WH-SGI-V-07497 WH-SGI-V-07497_contig16, whole genome shotgun sequence

⇒Summary: seq-len = 161867 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52357-63172 bp Zoom in on locus 1 x6 x6 x14 CRISPR array Location: 52357-52691 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 52357-52691 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 52785-53119 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 52785-53119 bp Num of repeats: 6 Spacers: s6-s10 Gene: cd09641:cas3HD Type: Type-I Location: 53891-56572 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 56575-58143 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 58140-58670 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 58680-59822 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 59824-60486 bp Gene: pfam08798:cas6e Type: other Location: 60461-61072 bp Gene: cd09719:cas1 Type: universal Location: 61099-61338 bp Gene: COG1518:cas1 Type: universal Location: 61387-61989 bp Gene: pfam09707:cas2 Type: universal Location: 61986-62285 bp CRISPR array Location: 62350-63172 bp Num of repeats: 14 Spacers: s11-s23 CRISPR array Location: 62350-63172 bp Num of repeats: 14 Spacers: s11-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52357-52691 bp]: array | spacers
           [Locus range 52785-53119 bp]: array | spacers
           [Locus range 62350-63172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)