CRISPRone

CRISPRone report for GCA_001451865.1_WH-SGI-V-07502

♦ Seq 1: LLQI01000007.1 Pseudomonas aeruginosa strain WH-SGI-V-07502 WH-SGI-V-07502_contig15, whole genome shotgun sequence

⇒Summary: seq-len = 117857 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19383-31202 bp Zoom in on locus 1 x39 x16 CRISPR array Location: 19383-21691 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 19383-21691 bp Num of repeats: 39 Spacers: s1-s38 Gene: cd09718:cas1 Type: universal Location: 21952-22926 bp Gene: COG1203:cas3 Type: Type-I Location: 22923-26153 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26211-27515 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27502-28485 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28496-29524 bp Gene: cd09739:cas6f Type: other Location: 29528-30091 bp CRISPR array Location: 30275-31202 bp Num of repeats: 16 Spacers: s39-s53 CRISPR array Location: 30275-31202 bp Num of repeats: 16 Spacers: s39-s53 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19383-21691 bp]: array | spacers
           [Locus range 30275-31202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)