CRISPRone

CRISPRone report for GCA_001451945.1_WH-SGI-V-07618

♦ Seq 1: LLQP01000082.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig29, whole genome shotgun sequence

⇒Summary: seq-len = 80516 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25669-26057 bp Zoom in on locus 1 x7 CRISPR array Location: 25669-26057 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 25669-26057 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25669-26057 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLQP01000074.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig21, whole genome shotgun sequence

⇒Summary: seq-len = 126513 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126021-126228 bp Zoom in on locus 1 x4 CRISPR array Location: 126021-126228 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 126021-126228 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 126021-126228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLQP01000085.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig31, whole genome shotgun sequence

⇒Summary: seq-len = 71326 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38896-49349 bp Zoom in on locus 1 x13 x19 CRISPR array Location: 38896-39644 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 38896-39644 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 39816-40379 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40383-41411 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 41422-42405 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42392-43696 bp Gene: COG1203:cas3 Type: Type-I Location: 43754-46990 bp Gene: cd09718:cas1 Type: universal Location: 46987-47961 bp CRISPR array Location: 48242-49349 bp Num of repeats: 19 Spacers: s13-s30 CRISPR array Location: 48242-49349 bp Num of repeats: 19 Spacers: s13-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38896-39644 bp]: array | spacers
           [Locus range 48242-49349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)