CRISPRone

CRISPRone report for GCA_001451965.1_WH-SGI-V-07619

♦ Seq 1: LLQQ01000055.1 Pseudomonas aeruginosa strain WH-SGI-V-07619 WH-SGI-V-07619_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 484869 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193256-203950 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 193256-194017 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 193256-194017 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 194082-194381 bp Gene: COG1518:cas1 Type: universal Location: 194378-194827 bp Gene: COG1518:cas1 Type: universal Location: 194834-195268 bp Gene: pfam08798:cas6e Type: other Location: 195295-195834 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 195881-196543 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 196545-197687 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 197697-198227 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 198224-199792 bp Gene: cd09641:cas3HD Type: Type-I Location: 199795-202476 bp CRISPR array Location: 203251-203950 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 203251-203950 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 193256-194017 bp]: array | spacers
           [Locus range 203251-203950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)