CRISPRone

CRISPRone report for GCA_001452075.1_WH-SGI-V-07630

♦ Seq 1: LLRB01000011.1 Pseudomonas aeruginosa strain WH-SGI-V-07630 WH-SGI-V-07630_contig19, whole genome shotgun sequence

⇒Summary: seq-len = 91470 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38306-49217 bp Zoom in on locus 1 x14 x20 CRISPR array Location: 38306-39115 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38306-39115 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39299-39862 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39866-40894 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40905-41888 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41875-43176 bp Gene: COG1203:cas3 Type: Type-I Location: 43587-46817 bp Gene: cd09718:cas1 Type: universal Location: 46814-47788 bp CRISPR array Location: 48049-49217 bp Num of repeats: 20 Spacers: s14-s32 CRISPR array Location: 48049-49217 bp Num of repeats: 20 Spacers: s14-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38306-39115 bp]: array | spacers
           [Locus range 48049-49217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLRB01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07630 WH-SGI-V-07630_contig4, whole genome shotgun sequence

⇒Summary: seq-len = 488438 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207408-208036 bp Zoom in on locus 1 x11 CRISPR array Location: 207408-208036 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 207408-208036 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207408-208036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)