CRISPRone

CRISPRone report for GCA_001452215.1_WH-SGI-V-07641

♦ Seq 1: LLRM01000081.1 Pseudomonas aeruginosa strain WH-SGI-V-07641 WH-SGI-V-07641_contig36, whole genome shotgun sequence

⇒Summary: seq-len = 46652 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 267-9811 bp Zoom in on locus 1 x4 x12 CRISPR array Location: 267-475 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 267-475 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09718:cas1 Type: universal Location: 735-1709 bp Gene: COG1203:cas3 Type: Type-I Location: 1706-4936 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4994-6298 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6285-7268 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7279-8307 bp Gene: cd09739:cas6f Type: other Location: 8311-8874 bp CRISPR array Location: 9124-9811 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 9124-9811 bp Num of repeats: 12 Spacers: s4-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 267-475 bp]: array | spacers
           [Locus range 9124-9811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLRM01000088.1 Pseudomonas aeruginosa strain WH-SGI-V-07641 WH-SGI-V-07641_contig42, whole genome shotgun sequence

⇒Summary: seq-len = 34380 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251-1118 bp Zoom in on locus 1 x15 CRISPR array Location: 251-1118 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 251-1118 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 251-1118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)