CRISPRone

CRISPRone report for GCA_001452335.1_WH-SGI-V-07649

♦ Seq 1: LLRU01000009.1 Pseudomonas aeruginosa strain WH-SGI-V-07649 WH-SGI-V-07649_contig17, whole genome shotgun sequence

⇒Summary: seq-len = 92012 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42548-53634 bp Zoom in on locus 1 x23 x14 CRISPR array Location: 42548-43897 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 42548-43897 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 44157-45131 bp Gene: COG1203:cas3 Type: Type-I Location: 45128-48358 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 48769-50070 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 50057-51040 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 51051-52079 bp Gene: cd09739:cas6f Type: other Location: 52083-52646 bp CRISPR array Location: 52831-53634 bp Num of repeats: 14 Spacers: s23-s35 CRISPR array Location: 52831-53634 bp Num of repeats: 14 Spacers: s23-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42548-43897 bp]: array | spacers
           [Locus range 52831-53634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLRU01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07649 WH-SGI-V-07649_contig3, whole genome shotgun sequence

⇒Summary: seq-len = 703172 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207530-208158 bp Zoom in on locus 1 x11 CRISPR array Location: 207530-208158 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 207530-208158 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207530-208158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)