CRISPRone

CRISPRone report for GCA_001452405.1_WH-SGI-V-07680

♦ Seq 1: LLSA01000008.1 Pseudomonas aeruginosa strain WH-SGI-V-07680 WH-SGI-V-07680_contig16, whole genome shotgun sequence

⇒Summary: seq-len = 164405 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80395-92109 bp 2 Locus 2: 110697-123787 bp Zoom in on locus 1 Zoom in on locus 2 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80395-81312 bp Gene: unk Type: unknown Location: 81463-82512 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 82555-83967 bp Gene: unk Type: unknown Location: 82582-84129 bp Gene: unk Type: unknown Location: 90574-91485 bp Gene: cd06127:DEDDh Type: Type-I Location: 91564-92109 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 110697-110999 bp Gene: cd09641:cas3HD Type: Type-I Location: 120681-122540 bp Gene: unk Type: unknown Location: 122356-122946 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 123482-123787 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLSA01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07680 WH-SGI-V-07680_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 566236 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 274546-285240 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 274546-275307 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 274546-275307 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 275372-275671 bp Gene: COG1518:cas1 Type: universal Location: 275668-276117 bp Gene: COG1518:cas1 Type: universal Location: 276124-276558 bp Gene: pfam08798:cas6e Type: other Location: 276585-277124 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 277171-277833 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 277835-278977 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 278987-279517 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 279514-281082 bp Gene: cd09641:cas3HD Type: Type-I Location: 281085-283766 bp CRISPR array Location: 284541-285240 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 284541-285240 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 274546-275307 bp]: array | spacers
           [Locus range 284541-285240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)