CRISPRone

CRISPRone report for GCA_001452835.1_WH-SGI-V-07249

♦ Seq 1: LLTJ01000016.1 Pseudomonas aeruginosa strain WH-SGI-V-07249 WH-SGI-V-07249_contig23, whole genome shotgun sequence

⇒Summary: seq-len = 103218 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76639-83427 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 76639-77670 bp Gene: unk Type: unknown Location: 77663-77980 bp Gene: unk Type: unknown Location: 78115-79005 bp Gene: pfam13280:WYL Type: other Location: 79285-80193 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 80206-83427 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLTJ01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07249 WH-SGI-V-07249_contig3, whole genome shotgun sequence

⇒Summary: seq-len = 451392 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196890-207401 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 196890-197651 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 196890-197651 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 197716-198015 bp Gene: cd09719:cas1 Type: universal Location: 198012-198902 bp Gene: pfam08798:cas6e Type: other Location: 198929-199468 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 199515-200177 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 200179-201321 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 201331-201861 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 201858-203426 bp Gene: cd09641:cas3HD Type: Type-I Location: 203429-206110 bp CRISPR array Location: 206884-207401 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 206884-207401 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 196890-197651 bp]: array | spacers
           [Locus range 206884-207401 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)