CRISPRone

CRISPRone report for GCA_001452905.1_WH-SGI-V-07253

♦ Seq 1: LLTN01000043.1 Pseudomonas aeruginosa strain WH-SGI-V-07253 WH-SGI-V-07253_contig32, whole genome shotgun sequence

⇒Summary: seq-len = 66755 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36669-47040 bp Zoom in on locus 1 x19 x6 CRISPR array Location: 36669-37778 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 36669-37778 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 37962-38525 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38529-39557 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39568-40551 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40538-41839 bp Gene: COG1203:cas3 Type: Type-I Location: 42250-45480 bp Gene: cd09718:cas1 Type: universal Location: 45477-46451 bp CRISPR array Location: 46712-47040 bp Num of repeats: 6 Spacers: s19-s23 CRISPR array Location: 46712-47040 bp Num of repeats: 6 Spacers: s19-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36669-37778 bp]: array | spacers
           [Locus range 46712-47040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLTN01000073.1 Pseudomonas aeruginosa strain WH-SGI-V-07253 WH-SGI-V-07253_contig6, whole genome shotgun sequence

⇒Summary: seq-len = 308564 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200989-211806 bp Zoom in on locus 1 x13 x2 x11 CRISPR array Location: 200989-201749 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 200989-201749 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 201814-202113 bp Gene: cd09719:cas1 Type: universal Location: 202110-203000 bp Gene: pfam08798:cas6e Type: other Location: 203027-203566 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 203613-204275 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 204277-205419 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 205429-205959 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 205956-207524 bp Gene: cd09641:cas3HD Type: Type-I Location: 207527-210208 bp CRISPR array Location: 210983-211072 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 210983-211072 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 211167-211806 bp Num of repeats: 11 Spacers: s14-s23 CRISPR array Location: 211167-211806 bp Num of repeats: 11 Spacers: s14-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200989-201749 bp]: array | spacers
           [Locus range 210983-211072 bp]: array | spacers
           [Locus range 211167-211806 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)