CRISPRone

CRISPRone report for GCA_001453075.1_WH-SGI-V-071082

♦ Seq 1: LLUI01000055.1 Pseudomonas aeruginosa strain WH-SGI-V-07282 WH-SGI-V-07282_contig8, whole genome shotgun sequence

⇒Summary: seq-len = 407808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 406203-407310 bp Zoom in on locus 1 x19 CRISPR array Location: 406203-407310 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 406203-407310 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 406203-407310 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLUI01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07282 WH-SGI-V-07282_contig21, whole genome shotgun sequence

⇒Summary: seq-len = 48718 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38499-48219 bp Zoom in on locus 1 x15 x5 CRISPR array Location: 38499-39368 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38499-39368 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39551-40114 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40118-41146 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41157-42140 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42127-43431 bp Gene: COG1203:cas3 Type: Type-I Location: 43489-46719 bp Gene: cd09718:cas1 Type: universal Location: 46716-47690 bp CRISPR array Location: 47952-48219 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 47952-48219 bp Num of repeats: 5 Spacers: s15-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38499-39368 bp]: array | spacers
           [Locus range 47952-48219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)