CRISPRone

CRISPRone report for GCA_001453145.1_WH-SGI-V-07420

♦ Seq 1: LLPH01000016.1 Pseudomonas aeruginosa strain WH-SGI-V-07420 WH-SGI-V-07420_contig23, whole genome shotgun sequence

⇒Summary: seq-len = 76623 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28470-38732 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 28470-29038 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 28470-29038 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 29302-30276 bp Gene: COG1203:cas3 Type: Type-I Location: 30273-33503 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 33561-34865 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 34852-35835 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 35846-36874 bp Gene: cd09739:cas6f Type: other Location: 36878-37441 bp CRISPR array Location: 37625-38732 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 37625-38732 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28470-29038 bp]: array | spacers
           [Locus range 37625-38732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)