CRISPRone

CRISPRone report for GCA_001453185.1_WH-SGI-V-07492

♦ Seq 1: LLPY01000033.1 Pseudomonas aeruginosa strain WH-SGI-V-07492 WH-SGI-V-07492_contig22, whole genome shotgun sequence

⇒Summary: seq-len = 68233 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20789-30871 bp Zoom in on locus 1 x17 x9 CRISPR array Location: 20789-21778 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 20789-21778 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 22042-23016 bp Gene: COG1203:cas3 Type: Type-I Location: 23013-26243 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26301-27605 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27592-28575 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28586-29614 bp Gene: cd09739:cas6f Type: other Location: 29618-30181 bp CRISPR array Location: 30365-30871 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 30365-30871 bp Num of repeats: 9 Spacers: s17-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20789-21778 bp]: array | spacers
           [Locus range 30365-30871 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLPY01000050.1 Pseudomonas aeruginosa strain WH-SGI-V-07492 WH-SGI-V-07492_contig38, whole genome shotgun sequence

⇒Summary: seq-len = 15639 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4285-13683 bp Zoom in on locus 1 x25 Gene: cd09641:cas3HD Type: Type-I Location: 4285-6519 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 6570-7244 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 7241-9004 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 9016-9885 bp Gene: pfam01930:cas4 Type: Type-I Location: 9904-10536 bp Gene: cd09721:cas1 Type: universal Location: 10540-11580 bp Gene: cd09725:cas2 Type: universal Location: 11590-11880 bp CRISPR array Location: 12062-13683 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 12062-13683 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12062-13683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)