CRISPRone

CRISPRone report for GCA_001453235.1_WH-SGI-V-07503

♦ Seq 1: LLQJ01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07503 WH-SGI-V-07503_contig21, whole genome shotgun sequence

⇒Summary: seq-len = 74051 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72847-73595 bp Zoom in on locus 1 x13 CRISPR array Location: 72847-73595 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 72847-73595 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72847-73595 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLQJ01000043.1 Pseudomonas aeruginosa strain WH-SGI-V-07503 WH-SGI-V-07503_contig48, whole genome shotgun sequence

⇒Summary: seq-len = 842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241-388 bp Zoom in on locus 1 x3 CRISPR array Location: 241-388 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 241-388 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241-388 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLQJ01000019.1 Pseudomonas aeruginosa strain WH-SGI-V-07503 WH-SGI-V-07503_contig26, whole genome shotgun sequence

⇒Summary: seq-len = 49017 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 264-10683 bp Zoom in on locus 1 x7 x19 CRISPR array Location: 264-652 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 264-652 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09718:cas1 Type: universal Location: 903-1877 bp Gene: COG1203:cas3 Type: Type-I Location: 1874-5104 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5515-6816 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6803-7786 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7797-8825 bp Gene: cd09739:cas6f Type: other Location: 8829-9392 bp CRISPR array Location: 9576-10683 bp Num of repeats: 19 Spacers: s7-s24 CRISPR array Location: 9576-10683 bp Num of repeats: 19 Spacers: s7-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 264-652 bp]: array | spacers
           [Locus range 9576-10683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)