CRISPRone

CRISPRone report for GCA_001453305.1_WH-SGI-V-07620

♦ Seq 1: LLQR01000019.1 Pseudomonas aeruginosa strain WH-SGI-V-07620 WH-SGI-V-07620_contig26, whole genome shotgun sequence

⇒Summary: seq-len = 39868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38611-39599 bp Zoom in on locus 1 x17 CRISPR array Location: 38611-39599 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 38611-39599 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38611-39599 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLQR01000024.1 Pseudomonas aeruginosa strain WH-SGI-V-07620 WH-SGI-V-07620_contig30, whole genome shotgun sequence

⇒Summary: seq-len = 10878 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240-10379 bp Zoom in on locus 1 x6 x21 CRISPR array Location: 240-567 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 240-567 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09739:cas6f Type: other Location: 751-1314 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1318-2346 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2357-3340 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3327-4631 bp Gene: COG1203:cas3 Type: Type-I Location: 4653-7919 bp Gene: cd09718:cas1 Type: universal Location: 7916-8890 bp CRISPR array Location: 9152-10379 bp Num of repeats: 21 Spacers: s6-s25 CRISPR array Location: 9152-10379 bp Num of repeats: 21 Spacers: s6-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240-567 bp]: array | spacers
           [Locus range 9152-10379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLQR01000022.1 Pseudomonas aeruginosa strain WH-SGI-V-07620 WH-SGI-V-07620_contig29, whole genome shotgun sequence

⇒Summary: seq-len = 14415 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 501-949 bp Zoom in on locus 1 x8 CRISPR array Location: 501-949 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 501-949 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 501-949 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)