CRISPRone

CRISPRone report for GCA_001453315.1_WH-SGI-V-07623

♦ Seq 1: LLQU01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07623 WH-SGI-V-07623_contig4, whole genome shotgun sequence

⇒Summary: seq-len = 507664 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 478975-489046 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 478975-482154 bp Gene: unk Type: unknown Location: 482519-483853 bp Gene: pfam13280:WYL Type: other Location: 483982-484857 bp Gene: unk Type: unknown Location: 484995-485657 bp Gene: cd09639:cas3 Type: Type-I Location: 485921-489046 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLQU01000009.1 Pseudomonas aeruginosa strain WH-SGI-V-07623 WH-SGI-V-07623_contig17, whole genome shotgun sequence

⇒Summary: seq-len = 118462 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19565-30835 bp Zoom in on locus 1 x18 x28 CRISPR array Location: 19565-20613 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 19565-20613 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09718:cas1 Type: universal Location: 20864-21838 bp Gene: COG1203:cas3 Type: Type-I Location: 21835-25065 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25123-26427 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26414-27397 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27408-28436 bp Gene: cd09739:cas6f Type: other Location: 28440-29003 bp CRISPR array Location: 29187-30835 bp Num of repeats: 28 Spacers: s18-s44 CRISPR array Location: 29187-30835 bp Num of repeats: 28 Spacers: s18-s44 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19565-20613 bp]: array | spacers
           [Locus range 29187-30835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)