CRISPRone

CRISPRone report for GCA_001453515.1_WH-SGI-V-07650

♦ Seq 1: LLRV01000136.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig35, whole genome shotgun sequence

⇒Summary: seq-len = 49148 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37512-48904 bp Zoom in on locus 1 x17 x25 CRISPR array Location: 37512-38496 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37512-38496 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 38680-39243 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39247-40275 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40286-41269 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41256-42557 bp Gene: COG1203:cas3 Type: Type-I Location: 42968-46204 bp Gene: cd09718:cas1 Type: universal Location: 46201-47175 bp CRISPR array Location: 47436-48904 bp Num of repeats: 25 Spacers: s17-s40 CRISPR array Location: 47436-48904 bp Num of repeats: 25 Spacers: s17-s40 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37512-38496 bp]: array | spacers
           [Locus range 47436-48904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLRV01000128.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig28, whole genome shotgun sequence

⇒Summary: seq-len = 69438 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54633-59999 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 54633-54956 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 55068-57458 bp Gene: unk Type: unknown Location: 57484-58962 bp Gene: COG4804:PD-DExK Type: other Location: 58959-59999 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLRV01000112.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 416100 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 301-1289 bp Zoom in on locus 1 x17 CRISPR array Location: 301-1289 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 301-1289 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 301-1289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)