CRISPRone

CRISPRone report for GCA_001453755.1_WH-SGI-V-07705

♦ Seq 1: LLSZ01000047.1 Pseudomonas aeruginosa strain WH-SGI-V-07705 WH-SGI-V-07705_contig23, whole genome shotgun sequence

⇒Summary: seq-len = 67259 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36844-47763 bp Zoom in on locus 1 x13 x27 CRISPR array Location: 36844-37592 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36844-37592 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37775-38338 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38342-39370 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39381-40364 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40351-41655 bp Gene: COG1203:cas3 Type: Type-I Location: 41713-44943 bp Gene: cd09718:cas1 Type: universal Location: 44940-45914 bp CRISPR array Location: 46176-47763 bp Num of repeats: 27 Spacers: s13-s38 CRISPR array Location: 46176-47763 bp Num of repeats: 27 Spacers: s13-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36844-37592 bp]: array | spacers
           [Locus range 46176-47763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLSZ01000120.1 Pseudomonas aeruginosa strain WH-SGI-V-07705 WH-SGI-V-07705_contig9, whole genome shotgun sequence

⇒Summary: seq-len = 247475 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160294-169749 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 160294-161370 bp Gene: unk Type: unknown Location: 162181-162462 bp Gene: unk Type: unknown Location: 162515-162733 bp Gene: unk Type: unknown Location: 163139-163720 bp Gene: pfam13280:WYL Type: other Location: 163734-164609 bp Gene: unk Type: unknown Location: 164739-166319 bp Gene: unk Type: unknown Location: 166343-166990 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 167383-169749 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)