CRISPRone

CRISPRone report for GCA_001453905.1_WH-SGI-V-07273

♦ Seq 1: LLUB01000019.1 Pseudomonas aeruginosa strain WH-SGI-V-07273 WH_SGI_V_07273_26, whole genome shotgun sequence

⇒Summary: seq-len = 42175 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 455-12391 bp Zoom in on locus 1 x10 CRISPR array Location: 455-1023 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 455-1023 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1274-2248 bp Gene: COG1203:cas3 Type: Type-I Location: 2245-5475 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5886-7187 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7174-8157 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8168-9196 bp Gene: cd09739:cas6f Type: other Location: 9200-9763 bp Gene: unk Type: unknown Location: 10131-11330 bp Gene: COG4804:PD-DExK Type: other Location: 11327-12391 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 455-1023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLUB01000007.1 Pseudomonas aeruginosa strain WH-SGI-V-07273 WH_SGI_V_07273_15, whole genome shotgun sequence

⇒Summary: seq-len = 143426 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142222-142970 bp Zoom in on locus 1 x13 CRISPR array Location: 142222-142970 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 142222-142970 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142222-142970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLUB01000016.1 Pseudomonas aeruginosa strain WH-SGI-V-07273 WH_SGI_V_07273_23, whole genome shotgun sequence

⇒Summary: seq-len = 49694 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10375-11482 bp Zoom in on locus 1 x19 CRISPR array Location: 10375-11482 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 10375-11482 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10375-11482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LLUB01000009.1 Pseudomonas aeruginosa strain WH-SGI-V-07273 WH_SGI_V_07273_17, whole genome shotgun sequence

⇒Summary: seq-len = 130651 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28651-34123 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 28651-29301 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 29308-30351 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 30351-31106 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 31135-31860 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 31949-34123 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)