CRISPRone

CRISPRone report for GCA_001454065.1_WH-SGI-V-07277

♦ Seq 1: LLUD01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07277 WH-SGI-V-07277_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 583269 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295482-307336 bp Zoom in on locus 1 x26 x18 CRISPR array Location: 295482-297037 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 295482-297037 bp Num of repeats: 26 Spacers: s1-s25 Gene: pfam09707:cas2 Type: universal Location: 297102-297401 bp Gene: cd09719:cas1 Type: universal Location: 297398-298288 bp Gene: pfam08798:cas6e Type: other Location: 298315-298854 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 298901-299563 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 299565-300707 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 300717-301247 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 301244-302812 bp Gene: cd09641:cas3HD Type: Type-I Location: 302815-305496 bp CRISPR array Location: 306271-307336 bp Num of repeats: 18 Spacers: s26-s42 CRISPR array Location: 306271-307336 bp Num of repeats: 18 Spacers: s26-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 295482-297037 bp]: array | spacers
           [Locus range 306271-307336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)