CRISPRone

CRISPRone report for GCA_001454125.1_WH-SGI-V-07290

♦ Seq 1: LLUN01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07290 WH-SGI-V-07290_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 621382 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116644-126099 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 116644-119010 bp Gene: unk Type: unknown Location: 119403-120050 bp Gene: unk Type: unknown Location: 120074-121654 bp Gene: pfam13280:WYL Type: other Location: 121784-122659 bp Gene: unk Type: unknown Location: 122673-123254 bp Gene: unk Type: unknown Location: 123660-123941 bp Gene: pfam13280:WYL Type: other Location: 125023-126099 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLUN01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07290 WH-SGI-V-07290_contig20, whole genome shotgun sequence

⇒Summary: seq-len = 116742 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19383-30182 bp Zoom in on locus 1 x26 x12 CRISPR array Location: 19383-20911 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 19383-20911 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09718:cas1 Type: universal Location: 21172-22146 bp Gene: COG1203:cas3 Type: Type-I Location: 22143-25373 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25431-26735 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26722-27705 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27716-28744 bp Gene: cd09739:cas6f Type: other Location: 28748-29311 bp CRISPR array Location: 29495-30182 bp Num of repeats: 12 Spacers: s26-s36 CRISPR array Location: 29495-30182 bp Num of repeats: 12 Spacers: s26-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19383-20911 bp]: array | spacers
           [Locus range 29495-30182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)