CRISPRone

CRISPRone report for GCA_001454145.1_WH-SGI-V-07291

♦ Seq 1: LLUO01000042.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_19, whole genome shotgun sequence

⇒Summary: seq-len = 72305 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22223-33741 bp Zoom in on locus 1 x28 x22 CRISPR array Location: 22223-23872 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 22223-23872 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 24133-25107 bp Gene: COG1203:cas3 Type: Type-I Location: 25104-28334 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28392-29696 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29683-30666 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30677-31705 bp Gene: cd09739:cas6f Type: other Location: 31709-32272 bp CRISPR array Location: 32457-33741 bp Num of repeats: 22 Spacers: s28-s48 CRISPR array Location: 32457-33741 bp Num of repeats: 22 Spacers: s28-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22223-23872 bp]: array | spacers
           [Locus range 32457-33741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLUO01000109.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_8, whole genome shotgun sequence

⇒Summary: seq-len = 350620 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98497-106758 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98497-100107 bp Gene: pfam13280:WYL Type: other Location: 100268-101284 bp Gene: COG2378:WYL Type: other Location: 102026-102868 bp Gene: unk Type: unknown Location: 102999-103286 bp Gene: unk Type: unknown Location: 103421-103999 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104392-106758 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLUO01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_1, whole genome shotgun sequence

⇒Summary: seq-len = 797567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424417-425344 bp Zoom in on locus 1 x16 CRISPR array Location: 424417-425344 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 424417-425344 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424417-425344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)