CRISPRone

CRISPRone report for GCA_001454335.1_WH-SGI-V-07312

♦ Seq 1: LLVB01000043.1 Pseudomonas aeruginosa strain WH-SGI-V-07312 WH_SGI_V_07312_6, whole genome shotgun sequence

⇒Summary: seq-len = 413983 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 402719-413453 bp Zoom in on locus 1 x26 x11 CRISPR array Location: 402719-404247 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 402719-404247 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 404430-404993 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 404997-406025 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 406036-407019 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 407006-408310 bp Gene: COG1203:cas3 Type: Type-I Location: 408368-411589 bp Gene: cd09718:cas1 Type: universal Location: 411586-412560 bp CRISPR array Location: 412825-413453 bp Num of repeats: 11 Spacers: s26-s35 CRISPR array Location: 412825-413453 bp Num of repeats: 11 Spacers: s26-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 402719-404247 bp]: array | spacers
           [Locus range 412825-413453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLVB01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07312 WH_SGI_V_07312_9, whole genome shotgun sequence

⇒Summary: seq-len = 289860 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135932-136440 bp Zoom in on locus 1 x9 CRISPR array Location: 135932-136440 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 135932-136440 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135932-136440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)