CRISPRone

CRISPRone report for GCA_001454385.1_WH-SGI-V-07314

♦ Seq 1: LLVD01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07314 WH_SGI_V_07314_18, whole genome shotgun sequence

⇒Summary: seq-len = 69985 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21008-31566 bp Zoom in on locus 1 x12 x22 CRISPR array Location: 21008-21696 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 21008-21696 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 21956-22930 bp Gene: COG1203:cas3 Type: Type-I Location: 22927-26157 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26215-27519 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27506-28489 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28500-29528 bp Gene: cd09739:cas6f Type: other Location: 29532-30095 bp CRISPR array Location: 30279-31566 bp Num of repeats: 22 Spacers: s12-s32 CRISPR array Location: 30279-31566 bp Num of repeats: 22 Spacers: s12-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21008-21696 bp]: array | spacers
           [Locus range 30279-31566 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLVD01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07314 WH_SGI_V_07314_2, whole genome shotgun sequence

⇒Summary: seq-len = 832402 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209431-220860 bp Zoom in on locus 1 x16 x21 CRISPR array Location: 209431-210374 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 209431-210374 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 210439-210738 bp Gene: cd09719:cas1 Type: universal Location: 210735-211625 bp Gene: pfam08798:cas6e Type: other Location: 211652-212263 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 212238-212900 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 212902-214044 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 214054-214584 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 214581-216149 bp Gene: cd09641:cas3HD Type: Type-I Location: 216152-218833 bp CRISPR array Location: 219610-220860 bp Num of repeats: 21 Spacers: s16-s35 CRISPR array Location: 219610-220860 bp Num of repeats: 21 Spacers: s16-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 209431-210374 bp]: array | spacers
           [Locus range 219610-220860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)