CRISPRone

CRISPRone report for GCA_001454755.1_WH-SGI-V-07318

♦ Seq 1: LLVG01000071.1 Pseudomonas aeruginosa strain WH-SGI-V-07318 WH_SGI_V_07318_20, whole genome shotgun sequence

⇒Summary: seq-len = 121156 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8048-18742 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 8048-8809 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 8048-8809 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 8874-9173 bp Gene: COG1518:cas1 Type: universal Location: 9170-9619 bp Gene: COG1518:cas1 Type: universal Location: 9626-10060 bp Gene: pfam08798:cas6e Type: other Location: 10087-10626 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 10673-11335 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 11337-12479 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 12489-13019 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 13016-14584 bp Gene: cd09641:cas3HD Type: Type-I Location: 14587-17268 bp CRISPR array Location: 18043-18742 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 18043-18742 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8048-8809 bp]: array | spacers
           [Locus range 18043-18742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)