CRISPRone

CRISPRone report for GCA_001471435.2_ASM147143v2

♦ Seq 1: LORX02000003.1 Pseudomonas aeruginosa strain FDAARGOS_121 unitig_0_quiver_pilon, whole genome shotgun sequence

⇒Summary: seq-len = 6942846 bp; # of CRISPR array = 2; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70535-81120 bp 2 Locus 2: 3399987-3412700 bp Zoom in on locus 1 Zoom in on locus 2 x18 x40 Gene: cls000170:cas4 Type: Type-I Location: 70535-72079 bp Gene: unk Type: unknown Location: 73163-73342 bp Gene: pfam00078:RT Type: other Location: 74074-75342 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 80251-81120 bp CRISPR array Location: 3399987-3401056 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3399987-3401056 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09641:cas3HD Type: Type-I Location: 3401830-3404511 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3404514-3406082 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3406079-3406609 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3406619-3407761 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3407763-3408425 bp Gene: pfam08798:cas6e Type: other Location: 3408400-3409011 bp Gene: cd09719:cas1 Type: universal Location: 3409038-3409928 bp Gene: pfam09707:cas2 Type: universal Location: 3409925-3410224 bp CRISPR array Location: 3410289-3412700 bp Num of repeats: 40 Spacers: s18-s56 CRISPR array Location: 3410289-3412700 bp Num of repeats: 40 Spacers: s18-s56 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3399987-3401056 bp]: array | spacers
           [Locus range 3410289-3412700 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)