CRISPRone

CRISPRone report for GCA_001482885.1_ASM148288v1

♦ Seq 1: LOQZ01000119.1 Pseudomonas aeruginosa strain SMC4386 contig_119, whole genome shotgun sequence

⇒Summary: seq-len = 257065 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97424-107814 bp Zoom in on locus 1 x8 x2 x9 CRISPR array Location: 97424-97880 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 97424-97880 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 97974-98064 bp Num of repeats: 2 Spacers: s8-s8 CRISPR array Location: 97974-98064 bp Num of repeats: 2 Spacers: s8-s8 Gene: cd09641:cas3HD Type: Type-I Location: 98838-101519 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 101522-103090 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 103087-103617 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 103627-104769 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 104771-105433 bp Gene: pfam08798:cas6e Type: other Location: 105408-106019 bp Gene: cd09719:cas1 Type: universal Location: 106046-106936 bp Gene: pfam09707:cas2 Type: universal Location: 106933-107232 bp CRISPR array Location: 107297-107814 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 107297-107814 bp Num of repeats: 9 Spacers: s9-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97424-97880 bp]: array | spacers
           [Locus range 97974-98064 bp]: array | spacers
           [Locus range 107297-107814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)