CRISPRone

CRISPRone report for GCA_001484885.1_CD26a54Rv1.0

♦ Seq 1: AMDM01000004.1 Clostridioides difficile CD26A54_R contig4, whole genome shotgun sequence

⇒Summary: seq-len = 2012939 bp; # of CRISPR array = 4; # of cas gene = 22  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5086-5180 bp 2 Locus 2: 46801-47426 bp 3 Locus 3: 507675-515549 bp 4 Locus 4: 1091004-1102186 bp 5 Locus 5: 1338009-1344541 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 Zoom in on locus 3 Zoom in on locus 4 x25 Zoom in on locus 5 x10 CRISPR array Location: 5086-5180 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5086-5180 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 46801-47426 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 46801-47426 bp Num of repeats: 10 Spacers: s2-s10 Gene: COG1203:cas3 Type: Type-I Location: 507675-509297 bp Gene: cd09641:cas3HD Type: Type-I Location: 509294-510082 bp Gene: cd09693:cas5 Type: Type-I Location: 510109-510915 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 510931-511944 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 511964-513439 bp Gene: pfam01881:cas6 Type: other Location: 513444-514181 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 514440-515549 bp CRISPR array Location: 1091004-1092621 bp Num of repeats: 25 Spacers: s11-s34 CRISPR array Location: 1091004-1092621 bp Num of repeats: 25 Spacers: s11-s34 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 1091850-1092083 bp Gene: unk Type: unknown Location: 1092305-1092472 bp Gene: cd09725:cas2 Type: universal Location: 1092805-1093071 bp Gene: cd09722:cas1 Type: universal Location: 1093074-1094054 bp Gene: pfam01930:cas4 Type: Type-I Location: 1094057-1094575 bp Gene: COG1203:cas3 Type: Type-I Location: 1094623-1096944 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1096955-1097656 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1097658-1098572 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1098574-1100451 bp Gene: pfam01881:cas6 Type: other Location: 1100457-1101251 bp Gene: pfam13280:WYL Type: other Location: 1101272-1102186 bp CRISPR array Location: 1338009-1338631 bp Num of repeats: 10 Spacers: s35-s43 CRISPR array Location: 1338009-1338631 bp Num of repeats: 10 Spacers: s35-s43 Gene: COG1203:cas3 Type: Type-I Location: 1338884-1340869 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1340880-1341950 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 1341971-1343137 bp Gene: pfam01881:cas6 Type: other Location: 1343139-1343903 bp Gene: cd09693:cas5 Type: Type-I Location: 1343894-1344541 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5086-5180 bp]: array | spacers
           [Locus range 46801-47426 bp]: array | spacers
           [Locus range 1091004-1092621 bp]: array | spacers
           [Locus range 1338009-1338631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AMDM01000002.1 Clostridioides difficile CD26A54_R contig2, whole genome shotgun sequence

⇒Summary: seq-len = 1881735 bp; # of CRISPR array = 6; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1130495-1131453 bp 2 Locus 2: 1339841-1340528 bp 3 Locus 3: 1416475-1420488 bp 4 Locus 4: 1451212-1451506 bp 5 Locus 5: 1543889-1546400 bp 6 Locus 6: 1683678-1684502 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 CRISPR array Location: 1130495-1131453 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1130495-1131453 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1339841-1340528 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1339841-1340528 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1416475-1417074 bp Gene: unk Type: unknown Location: 1417242-1417709 bp Gene: COG2378:WYL Type: other Location: 1417814-1418731 bp Gene: cas14:cas14 Type: Type-V Location: 1419370-1420488 bp CRISPR array Location: 1451212-1451506 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1451212-1451506 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1543889-1544246 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1543889-1544246 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1546110-1546400 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1546110-1546400 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1683678-1684502 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1683678-1684502 bp Num of repeats: 13 Spacers: s38-s49 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1130495-1131453 bp]: array | spacers
           [Locus range 1339841-1340528 bp]: array | spacers
           [Locus range 1451212-1451506 bp]: array | spacers
           [Locus range 1543889-1544246 bp]: array | spacers
           [Locus range 1546110-1546400 bp]: array | spacers
           [Locus range 1683678-1684502 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)