CRISPRone

CRISPRone report for GCA_001484895.1_CD26A54SV1.0

♦ Seq 1: AMDL01000003.1 Clostridioides difficile CD26A54_S contig3, whole genome shotgun sequence

⇒Summary: seq-len = 445693 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6794-7088 bp 2 Locus 2: 99466-101977 bp 3 Locus 3: 239255-240079 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 Zoom in on locus 3 x13 CRISPR array Location: 6794-7088 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6794-7088 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 99466-99823 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 99466-99823 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 101687-101977 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 101687-101977 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 239255-240079 bp Num of repeats: 13 Spacers: s14-s25 CRISPR array Location: 239255-240079 bp Num of repeats: 13 Spacers: s14-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6794-7088 bp]: array | spacers
           [Locus range 99466-99823 bp]: array | spacers
           [Locus range 101687-101977 bp]: array | spacers
           [Locus range 239255-240079 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AMDL01000006.1 Clostridioides difficile CD26A54_S contig6, whole genome shotgun sequence

⇒Summary: seq-len = 2012710 bp; # of CRISPR array = 4; # of cas gene = 22  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2689-2783 bp 2 Locus 2: 44404-45029 bp 3 Locus 3: 505278-513152 bp 4 Locus 4: 1088583-1099765 bp 5 Locus 5: 1335434-1341966 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 Zoom in on locus 3 Zoom in on locus 4 x25 Zoom in on locus 5 x10 CRISPR array Location: 2689-2783 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2689-2783 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44404-45029 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 44404-45029 bp Num of repeats: 10 Spacers: s2-s10 Gene: COG1203:cas3 Type: Type-I Location: 505278-506900 bp Gene: cd09641:cas3HD Type: Type-I Location: 506897-507685 bp Gene: cd09693:cas5 Type: Type-I Location: 507712-508518 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 508534-509547 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 509567-511042 bp Gene: pfam01881:cas6 Type: other Location: 511047-511784 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 512043-513152 bp CRISPR array Location: 1088583-1090200 bp Num of repeats: 25 Spacers: s11-s34 CRISPR array Location: 1088583-1090200 bp Num of repeats: 25 Spacers: s11-s34 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 1089429-1089662 bp Gene: unk Type: unknown Location: 1089884-1090051 bp Gene: cd09725:cas2 Type: universal Location: 1090384-1090650 bp Gene: cd09722:cas1 Type: universal Location: 1090653-1091633 bp Gene: pfam01930:cas4 Type: Type-I Location: 1091636-1092154 bp Gene: COG1203:cas3 Type: Type-I Location: 1092202-1094523 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1094534-1095235 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1095237-1096151 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1096153-1098030 bp Gene: pfam01881:cas6 Type: other Location: 1098036-1098830 bp Gene: pfam13280:WYL Type: other Location: 1098851-1099765 bp CRISPR array Location: 1335434-1336056 bp Num of repeats: 10 Spacers: s35-s43 CRISPR array Location: 1335434-1336056 bp Num of repeats: 10 Spacers: s35-s43 Gene: COG1203:cas3 Type: Type-I Location: 1336309-1338294 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1338305-1339375 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 1339396-1340562 bp Gene: pfam01881:cas6 Type: other Location: 1340564-1341328 bp Gene: cd09693:cas5 Type: Type-I Location: 1341319-1341966 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2689-2783 bp]: array | spacers
           [Locus range 44404-45029 bp]: array | spacers
           [Locus range 1088583-1090200 bp]: array | spacers
           [Locus range 1335434-1336056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AMDL01000002.1 Clostridioides difficile CD26A54_S contig2, whole genome shotgun sequence

⇒Summary: seq-len = 1445886 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1144831-1145789 bp 2 Locus 2: 1354175-1354862 bp 3 Locus 3: 1430809-1434822 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 CRISPR array Location: 1144831-1145789 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1144831-1145789 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1354175-1354862 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1354175-1354862 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1430809-1431408 bp Gene: unk Type: unknown Location: 1431576-1432043 bp Gene: COG2378:WYL Type: other Location: 1432148-1433065 bp Gene: cas14:cas14 Type: Type-V Location: 1433704-1434822 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1144831-1145789 bp]: array | spacers
           [Locus range 1354175-1354862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)