CRISPRone

CRISPRone report for GCA_001500235.1_ASM150023v1

♦ Seq 1: LNBU01000028.1 Pseudomonas aeruginosa 0C2E isolate RP1 scaffold_31, whole genome shotgun sequence

⇒Summary: seq-len = 94497 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32199-42710 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 32199-32960 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 32199-32960 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 33025-33324 bp Gene: cd09719:cas1 Type: universal Location: 33321-34211 bp Gene: pfam08798:cas6e Type: other Location: 34238-34777 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 34824-35486 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 35488-36630 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 36640-37170 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 37167-38735 bp Gene: cd09641:cas3HD Type: Type-I Location: 38738-41419 bp CRISPR array Location: 42193-42710 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 42193-42710 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32199-32960 bp]: array | spacers
           [Locus range 42193-42710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)