CRISPRone

CRISPRone report for GCA_001500245.1_ASM150024v1

♦ Seq 1: LNDM01000004.1 Pseudomonas aeruginosa strain 0C4A isolate RP45 scaffold_11, whole genome shotgun sequence

⇒Summary: seq-len = 131819 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110614-122526 bp Zoom in on locus 1 x24 x21 CRISPR array Location: 110614-112045 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 110614-112045 bp Num of repeats: 24 Spacers: s1-s23 Gene: pfam09707:cas2 Type: universal Location: 112110-112409 bp Gene: cd09719:cas1 Type: universal Location: 112406-113296 bp Gene: pfam08798:cas6e Type: other Location: 113323-113862 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 113909-114571 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 114573-115715 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 115725-116255 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 116252-117820 bp Gene: cd09641:cas3HD Type: Type-I Location: 117823-120504 bp CRISPR array Location: 121277-122526 bp Num of repeats: 21 Spacers: s24-s43 CRISPR array Location: 121277-122526 bp Num of repeats: 21 Spacers: s24-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110614-112045 bp]: array | spacers
           [Locus range 121277-122526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)