CRISPRone

CRISPRone report for GCA_001545175.1_ASM154517v1

♦ Seq 1: LRSH01000025.1 Pseudomonas aeruginosa strain AU13626 contig_31, whole genome shotgun sequence

⇒Summary: seq-len = 46548 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8460-18817 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 8460-9160 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8460-9160 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9932-12613 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12616-14184 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14181-14711 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14721-15863 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15865-16527 bp Gene: pfam08798:cas6e Type: other Location: 16502-17113 bp Gene: cd09719:cas1 Type: universal Location: 17140-17451 bp Gene: pfam09707:cas2 Type: universal Location: 17448-17747 bp CRISPR array Location: 17812-18817 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 17812-18817 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8460-9160 bp]: array | spacers
           [Locus range 17812-18817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRSH01000004.1 Pseudomonas aeruginosa strain AU13626 contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 220498 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172497-182936 bp Zoom in on locus 1 x14 x18 CRISPR array Location: 172497-173306 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 172497-173306 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 173566-174540 bp Gene: COG1203:cas3 Type: Type-I Location: 174537-177767 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 177825-179129 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 179116-180099 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 180110-181138 bp Gene: cd09739:cas6f Type: other Location: 181142-181705 bp CRISPR array Location: 181889-182936 bp Num of repeats: 18 Spacers: s14-s30 CRISPR array Location: 181889-182936 bp Num of repeats: 18 Spacers: s14-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 172497-173306 bp]: array | spacers
           [Locus range 181889-182936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)