CRISPRone

CRISPRone report for GCA_001545185.1_ASM154518v1

♦ Seq 1: LRSI01000050.1 Pseudomonas aeruginosa strain AU22632 contig_45, whole genome shotgun sequence

⇒Summary: seq-len = 46798 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8305-18662 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 8305-9005 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8305-9005 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9777-12458 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12461-14029 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14026-14556 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14566-15708 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15710-16372 bp Gene: pfam08798:cas6e Type: other Location: 16347-16958 bp Gene: cd09719:cas1 Type: universal Location: 16985-17296 bp Gene: pfam09707:cas2 Type: universal Location: 17293-17592 bp CRISPR array Location: 17657-18662 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 17657-18662 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8305-9005 bp]: array | spacers
           [Locus range 17657-18662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)