CRISPRone

CRISPRone report for GCA_001545195.1_ASM154519v1

♦ Seq 1: LRSJ01000010.1 Pseudomonas aeruginosa strain AU24787 contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 137485 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8447-18804 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 8447-9147 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8447-9147 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9919-12600 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12603-14171 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14168-14698 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14708-15850 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15852-16514 bp Gene: pfam08798:cas6e Type: other Location: 16489-17100 bp Gene: cd09719:cas1 Type: universal Location: 17127-17438 bp Gene: pfam09707:cas2 Type: universal Location: 17435-17734 bp CRISPR array Location: 17799-18804 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 17799-18804 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8447-9147 bp]: array | spacers
           [Locus range 17799-18804 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)