CRISPRone

CRISPRone report for GCA_001545205.1_ASM154520v1

♦ Seq 1: LRSF01000040.1 Pseudomonas aeruginosa strain AU1215 contig_45, whole genome shotgun sequence

⇒Summary: seq-len = 46937 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8429-18786 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 8429-9129 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8429-9129 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9901-12582 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12585-14153 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14150-14680 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14690-15832 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15834-16496 bp Gene: pfam08798:cas6e Type: other Location: 16471-17082 bp Gene: cd09719:cas1 Type: universal Location: 17109-17420 bp Gene: pfam09707:cas2 Type: universal Location: 17417-17716 bp CRISPR array Location: 17781-18786 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 17781-18786 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8429-9129 bp]: array | spacers
           [Locus range 17781-18786 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRSF01000024.1 Pseudomonas aeruginosa strain AU1215 contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 83414 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35415-45854 bp Zoom in on locus 1 x14 x18 CRISPR array Location: 35415-36224 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 35415-36224 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 36484-37458 bp Gene: COG1203:cas3 Type: Type-I Location: 37455-40685 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40743-42047 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 42034-43017 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 43028-44056 bp Gene: cd09739:cas6f Type: other Location: 44060-44623 bp CRISPR array Location: 44807-45854 bp Num of repeats: 18 Spacers: s14-s30 CRISPR array Location: 44807-45854 bp Num of repeats: 18 Spacers: s14-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35415-36224 bp]: array | spacers
           [Locus range 44807-45854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)