CRISPRone

CRISPRone report for GCA_001547575.1_ASM154757v1

♦ Seq 1: LGVH01000165.1 Pseudomonas aeruginosa strain BH6 Contig_247, whole genome shotgun sequence

⇒Summary: seq-len = 36572 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29645-35691 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 29645-31189 bp Gene: unk Type: unknown Location: 32273-32452 bp Gene: unk Type: unknown Location: 32636-33034 bp Gene: pfam00078:RT Type: other Location: 33184-33900 bp Gene: unk Type: unknown Location: 33944-34609 bp Gene: unk Type: unknown Location: 34798-35106 bp Gene: pfam00078:RT Type: other Location: 35158-35691 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LGVH01000763.1 Pseudomonas aeruginosa strain BH6 Contig_82, whole genome shotgun sequence

⇒Summary: seq-len = 28523 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-9829 bp Zoom in on locus 1 x6 x16 CRISPR array Location: 0-318 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-318 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 579-1553 bp Gene: COG1203:cas3 Type: Type-I Location: 1550-4780 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4838-6142 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6129-7112 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7123-8151 bp Gene: cd09739:cas6f Type: other Location: 8155-8718 bp CRISPR array Location: 8902-9829 bp Num of repeats: 16 Spacers: s6-s20 CRISPR array Location: 8902-9829 bp Num of repeats: 16 Spacers: s6-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-318 bp]: array | spacers
           [Locus range 8902-9829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LGVH01000504.1 Pseudomonas aeruginosa strain BH6 Contig_552, whole genome shotgun sequence

⇒Summary: seq-len = 427 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-436 bp Zoom in on locus 1 x8 CRISPR array Location: 0-436 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-436 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LGVH01000055.1 Pseudomonas aeruginosa strain BH6 Contig_148, whole genome shotgun sequence

⇒Summary: seq-len = 15621 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14942-15631 bp Zoom in on locus 1 x12 CRISPR array Location: 14942-15631 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 14942-15631 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14942-15631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)