CRISPRone

CRISPRone report for GCA_001554535.1_ASM155453v1

♦ Seq 1: LRYP01000035.1 Pseudomonas aeruginosa strain AU12175 NODE_41_length_48961_cov_7.25388_ID_81, whole genome shotgun sequence

⇒Summary: seq-len = 48961 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 350-10949 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 350-918 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 350-918 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1169-2143 bp Gene: COG1203:cas3 Type: Type-I Location: 2140-5370 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5781-7082 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7069-8052 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8063-9091 bp Gene: cd09739:cas6f Type: other Location: 9095-9658 bp CRISPR array Location: 9842-10949 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9842-10949 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 350-918 bp]: array | spacers
           [Locus range 9842-10949 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRYP01000049.1 Pseudomonas aeruginosa strain AU12175 NODE_54_length_18290_cov_7.57823_ID_107, whole genome shotgun sequence

⇒Summary: seq-len = 18290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17190-17938 bp Zoom in on locus 1 x13 CRISPR array Location: 17190-17938 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 17190-17938 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17190-17938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)