CRISPRone

CRISPRone report for GCA_001554855.1_ASM155485v1

♦ Seq 1: LRZK01000019.1 Pseudomonas aeruginosa strain AU10502 NODE_27_length_50138_cov_5.62902_ID_53, whole genome shotgun sequence

⇒Summary: seq-len = 50138 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-11912 bp Zoom in on locus 1 x20 x25 CRISPR array Location: 345-1514 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 345-1514 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 1774-2748 bp Gene: COG1203:cas3 Type: Type-I Location: 2745-5975 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6386-7687 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7674-8657 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8668-9696 bp Gene: cd09739:cas6f Type: other Location: 9700-10263 bp CRISPR array Location: 10448-11912 bp Num of repeats: 25 Spacers: s20-s43 CRISPR array Location: 10448-11912 bp Num of repeats: 25 Spacers: s20-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 345-1514 bp]: array | spacers
           [Locus range 10448-11912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRZK01000002.1 Pseudomonas aeruginosa strain AU10502 NODE_11_length_177920_cov_5.83594_ID_21, whole genome shotgun sequence

⇒Summary: seq-len = 177920 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 177068-177575 bp Zoom in on locus 1 x9 CRISPR array Location: 177068-177575 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 177068-177575 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 177068-177575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)