CRISPRone

CRISPRone report for GCA_001554895.1_ASM155489v1

♦ Seq 1: LRZM01000003.1 Pseudomonas aeruginosa strain AU11991 NODE_12_length_178025_cov_6.59422_ID_23, whole genome shotgun sequence

⇒Summary: seq-len = 178025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 177173-177680 bp Zoom in on locus 1 x9 CRISPR array Location: 177173-177680 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 177173-177680 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 177173-177680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRZM01000020.1 Pseudomonas aeruginosa strain AU11991 NODE_28_length_50139_cov_6.5478_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 50139 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-11912 bp Zoom in on locus 1 x20 x25 CRISPR array Location: 345-1514 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 345-1514 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 1774-2748 bp Gene: COG1203:cas3 Type: Type-I Location: 2745-5975 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6386-7687 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7674-8657 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8668-9696 bp Gene: cd09739:cas6f Type: other Location: 9700-10263 bp CRISPR array Location: 10448-11912 bp Num of repeats: 25 Spacers: s20-s43 CRISPR array Location: 10448-11912 bp Num of repeats: 25 Spacers: s20-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 345-1514 bp]: array | spacers
           [Locus range 10448-11912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)