CRISPRone

CRISPRone report for GCA_001554955.1_ASM155495v1

♦ Seq 1: LRZS01000027.1 Pseudomonas aeruginosa strain AU19803 NODE_34_length_39292_cov_8.70189_ID_67, whole genome shotgun sequence

⇒Summary: seq-len = 39292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136-1064 bp Zoom in on locus 1 x16 CRISPR array Location: 136-1064 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 136-1064 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136-1064 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRZS01000005.1 Pseudomonas aeruginosa strain AU19803 NODE_14_length_172440_cov_8.43305_ID_27, whole genome shotgun sequence

⇒Summary: seq-len = 172440 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162297-172302 bp Zoom in on locus 1 x11 x8 CRISPR array Location: 162297-162925 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 162297-162925 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 163185-164159 bp Gene: COG1203:cas3 Type: Type-I Location: 164156-167230 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 167797-169098 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 169085-170068 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 170079-171107 bp Gene: cd09739:cas6f Type: other Location: 171111-171674 bp CRISPR array Location: 171859-172302 bp Num of repeats: 8 Spacers: s11-s17 CRISPR array Location: 171859-172302 bp Num of repeats: 8 Spacers: s11-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 162297-162925 bp]: array | spacers
           [Locus range 171859-172302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LRZS01000052.1 Pseudomonas aeruginosa strain AU19803 NODE_9_length_232854_cov_9.86689_ID_17, whole genome shotgun sequence

⇒Summary: seq-len = 232854 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154-602 bp Zoom in on locus 1 x8 CRISPR array Location: 154-602 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 154-602 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 154-602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LRZS01000002.1 Pseudomonas aeruginosa strain AU19803 NODE_11_length_207680_cov_9.42254_ID_21, whole genome shotgun sequence

⇒Summary: seq-len = 207680 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207413-207560 bp Zoom in on locus 1 x3 CRISPR array Location: 207413-207560 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 207413-207560 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207413-207560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)