CRISPRone

CRISPRone report for GCA_001555255.1_ASM155525v1

♦ Seq 1: LRZL01000022.1 Pseudomonas aeruginosa strain AU11990 NODE_2_length_717869_cov_7.45327_ID_3, whole genome shotgun sequence

⇒Summary: seq-len = 717869 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 219649-220156 bp Zoom in on locus 1 x9 CRISPR array Location: 219649-220156 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 219649-220156 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 219649-220156 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRZL01000012.1 Pseudomonas aeruginosa strain AU11990 NODE_20_length_72225_cov_6.81641_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 72225 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22432-33999 bp Zoom in on locus 1 x20 x25 CRISPR array Location: 22432-23601 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 22432-23601 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 23861-24835 bp Gene: COG1203:cas3 Type: Type-I Location: 24832-28062 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28473-29774 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29761-30744 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30755-31783 bp Gene: cd09739:cas6f Type: other Location: 31787-32350 bp CRISPR array Location: 32535-33999 bp Num of repeats: 25 Spacers: s20-s43 CRISPR array Location: 32535-33999 bp Num of repeats: 25 Spacers: s20-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22432-23601 bp]: array | spacers
           [Locus range 32535-33999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)