CRISPRone

CRISPRone report for GCA_001555295.1_ASM155529v1

♦ Seq 1: LRZP01000027.1 Pseudomonas aeruginosa strain AU25116 NODE_34_length_49422_cov_6.65797_ID_67, whole genome shotgun sequence

⇒Summary: seq-len = 49422 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-11196 bp Zoom in on locus 1 x9 x24 CRISPR array Location: 345-853 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 345-853 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 1037-1600 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1604-2632 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2643-3626 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3613-4914 bp Gene: COG1203:cas3 Type: Type-I Location: 5325-8555 bp Gene: cd09718:cas1 Type: universal Location: 8552-9526 bp CRISPR array Location: 9787-11196 bp Num of repeats: 24 Spacers: s9-s31 CRISPR array Location: 9787-11196 bp Num of repeats: 24 Spacers: s9-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 345-853 bp]: array | spacers
           [Locus range 9787-11196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRZP01000005.1 Pseudomonas aeruginosa strain AU25116 NODE_14_length_134476_cov_7.11539_ID_27, whole genome shotgun sequence

⇒Summary: seq-len = 134476 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133624-134131 bp Zoom in on locus 1 x9 CRISPR array Location: 133624-134131 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 133624-134131 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133624-134131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)